Welcome to the Mouse Omics of LongGeneDB.

Please enter the name of a mouse long gene. You will obtain the gene’s profiles of conversation among 60 species, histone modifications (H3K4me3, H3K4me1, and H3K27ac) in 14 tissues, gene expression in 22 tissues, higher-order chromatin organization (Hi-C), and single-cell transcriptome.

Please enter a gene name: (e.g. Shank2, Cdkl5, Cntnap2, Kcnip1)

Gene:

Conservation

The phyloP scores, which were calculated by the PHAST package for multiple alignments of 59 vertebrate genomes to the mouse genome, were collected from the UCSC Genome Browser.

Histone Modification

The 83 ChIP-seq files of the three histone modifications across the 14 mouse tissues were downloaded from the EBI ENA database. The ChIP-seq data were generated from 8-week-old mice by the ENCODE project.

High-Order Chromatin Organization

The Hi-C files were downloaded from the EBI ENA database. The Hi-C data were generated from the cerebral cortex of 8-week-old mice by the ENCODE project.

Tissue Specific Expression

The 109 mRNA-seq files were downloaded from the EBI ENA database. The mRNA-seq data were generated from the 22 tissues of 8-week-old mice by the ENCODE project.

Single Cell Expression Profile

The two single nuclear RNA-seq files were downloaded from the EBI ENA database. The single nuclear RNA-seq data were generated from 8-week-old mice.